Location: SLC transporters @ a70688f8c9b0 / Facilitated transporter / CellMLV2 / GLUT1_BG.sedml

Author:

Weiwei Ai <wai484@aucklanduni.ac.nz>

Date:

2024-04-03 14:25:12+13:00

Desc:

Add volume factor for full BG params and re-run the simulation

Permanent Source URI:

http://models.cellml.org/workspace/b65/rawfile/a70688f8c9b0f3e6f14c008fb76adfbb445b095c/Facilitated transporter/CellMLV2/GLUT1_BG.sedml

<?xml version="1.0" encoding="UTF-8"?>
<sedML xmlns="http://sed-ml.org/sed-ml/level1/version4" level="1" version="4">
  <listOfModels>
    <model id="GLUT1_BG_24_oi" language="urn:sedml:language:cellml" source="GLUT1_BG.cellml">
      <listOfChanges>
        <changeAttribute target="/cellml:model/cellml:component[@name=&quot;params_BG&quot;]/cellml:variable[@name=&quot;g_o&quot;]/@initial_value" newValue="24"/>
        <changeAttribute target="/cellml:model/cellml:component[@name=&quot;params_BG&quot;]/cellml:variable[@name=&quot;g_i&quot;]/@initial_value" newValue="1e-4"/>
      </listOfChanges>
    </model>
  </listOfModels>
  <listOfSimulations>
    <uniformTimeCourse id="sim_GLUT1_BG_24_oi" initialTime="0" outputStartTime="25" outputEndTime="25" numberOfSteps="0">
      <algorithm name="LSODA" kisaoID="KISAO:0000088">
        <listOfAlgorithmParameters>
          <algorithmParameter name="max_step" kisaoID="KISAO:0000467" value="100"/>
        </listOfAlgorithmParameters>
      </algorithm>
    </uniformTimeCourse>
  </listOfSimulations>
  <listOfTasks>
    <task id="task_GLUT1_BG_24_oi" modelReference="GLUT1_BG_24_oi" simulationReference="sim_GLUT1_BG_24_oi"/>
  </listOfTasks>
  <listOfDataGenerators>
    <dataGenerator id="dg_GLUT1_BG_24_oi_t" name="dg_GLUT1_BG_24_oi_t">
      <math xmlns="http://www.w3.org/1998/Math/MathML">
        <apply>
          <times/>
          <ci> GLUT1_BG_24_oi_t </ci>
          <ci> scale </ci>
        </apply>
      </math>
      <listOfVariables>
        <variable id="GLUT1_BG_24_oi_t" target="/cellml:model/cellml:component[@name=&quot;GLUT1_BG&quot;]/cellml:variable[@name=&quot;t&quot;]" taskReference="task_GLUT1_BG_24_oi" modelReference="GLUT1_BG_24_oi"/>
      </listOfVariables>
      <listOfParameters>
        <parameter id="scale" value="1"/>
      </listOfParameters>
    </dataGenerator>
    <dataGenerator id="dg_GLUT1_BG_24_oi_v_r1" name="dg_GLUT1_BG_24_oi_v_r1">
      <math xmlns="http://www.w3.org/1998/Math/MathML">
        <apply>
          <times/>
          <ci> GLUT1_BG_24_oi_v_r1 </ci>
          <ci> scale </ci>
        </apply>
      </math>
      <listOfVariables>
        <variable id="GLUT1_BG_24_oi_v_r1" target="/cellml:model/cellml:component[@name=&quot;GLUT1_BG&quot;]/cellml:variable[@name=&quot;v_r1&quot;]" taskReference="task_GLUT1_BG_24_oi" modelReference="GLUT1_BG_24_oi"/>
      </listOfVariables>
      <listOfParameters>
        <parameter id="scale" value="0.0111111111111111"/>
      </listOfParameters>
    </dataGenerator>
    <dataGenerator id="dg_GLUT1_BG_24_oi_q_init_Ao" name="dg_GLUT1_BG_24_oi_q_init_Ao">
      <math xmlns="http://www.w3.org/1998/Math/MathML">
        <apply>
          <times/>
          <ci> GLUT1_BG_24_oi_q_init_Ao </ci>
          <ci> scale </ci>
        </apply>
      </math>
      <listOfVariables>
        <variable id="GLUT1_BG_24_oi_q_init_Ao" target="/cellml:model/cellml:component[@name=&quot;GLUT1_BG&quot;]/cellml:variable[@name=&quot;q_init_Ao&quot;]" taskReference="task_GLUT1_BG_24_oi" modelReference="GLUT1_BG_24_oi"/>
      </listOfVariables>
      <listOfParameters>
        <parameter id="scale" value="0.0111111111111111"/>
      </listOfParameters>
    </dataGenerator>
  </listOfDataGenerators>
  <listOfOutputs>
    <report id="report_task_GLUT1_BG_24_oi" name="report_task_GLUT1_BG_24_oi">
      <listOfDataSets>
        <dataSet id="dataset_GLUT1_BG_24_oi_t" label="t" dataReference="dg_GLUT1_BG_24_oi_t"/>
        <dataSet id="dataset_GLUT1_BG_24_oi_v_r1" label="v_r1" dataReference="dg_GLUT1_BG_24_oi_v_r1"/>
        <dataSet id="dataset_GLUT1_BG_24_oi_q_init_Ao" label="q_init_Ao" dataReference="dg_GLUT1_BG_24_oi_q_init_Ao"/>
      </listOfDataSets>
    </report>
  </listOfOutputs>
</sedML>